PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24358.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91688 Da    PI: 6.5409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598.1e-191573357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PHU24358.1 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                5679*****************************************************97 PP
2START170.51.1e-531603673205
                 HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
       START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                 aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++++v+ ++  g+++l +++l+
  PHU24358.1 160 AEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRDCRTVDVINVLPTAngGTIELLYMQLY 257
                 7899*****************************************************.9999999999****************9999*********** PP

                 TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHH CS
       START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegak 194
                 a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l+++ ++++lr+l++s+++ ++k
  PHU24358.1 258 APTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVPNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWCVPEVLRPLYESSAVLAQK 356
                 *************************************9999999******************************************************* PP

                 HHHHHTXXXXX CS
       START 195 twvatlqrqce 205
                 t+va+l+++++
  PHU24358.1 357 TTVAALRYLRQ 367
                 ******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MASCKDGKSV MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRRQTH  120
STPLATKDTS CESVVTSGQH HLTSQHPPRD ASPAGLLSTA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWFR DCRTVDVINV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP  300
VPNFVRAEIL PSGYLIRPCE GGGSIIHIVD HMNLEAWCVP EVLRPLYESS AVLAQKTTVA  360
ALRYLRQIAQ EVSQTNVTNW GRRPAALRAL GQRLSRGFNE ALNGLADEGW SMLDSDGMDD  420
VAILVNSSPD KLMGLNLSFA NGFSSMSNAV MCAKASMLPQ NVPPAILLRF LREHRSEWAD  480
NNIDAYAAAA IKVGPCSLPG ARVGNFGGQV ILPLAHTVEH EEASLVIKLE GHSPEDAIMP  540
RDMFLLQLCS GMDENAVGTC AELVFAPIDA SFADDAPLLP SGFRIISLES GKEASSPNRT  600
LDLTSALETG PAENKVANDL HTVGGTSRSV MTIAFQFAFE SHMQESVASM ARQYVRSIIS  660
SVQRVALALS PSHLGSHGGL RSPLGTPEAH TLARWICQSY RCFLGVELLK ANTDQGSESI  720
LKGLWHHSDA IICCSAKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGKKNLCTE  780
FPQIMQQGFA CLQGGICLSS MSRPISYERA VAWKVMNEED TAHCICFMFV NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein