PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24436.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 562aa    MW: 63152.7 Da    PI: 6.1398
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS236.11.6e-721845612374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL  cA a++ g+++ +q+lL  l+elas +gd++ Rlaa+ ++AL ++l++   +l+++  +++ ++ n++    +l  f ++sP++++ + +aN+
  PHU24436.1 184 EHLLNPCAAAITVGNMNHVQHLLYVLHELASFTGDANYRLAAHGLRALTHHLSS-PGSLSASAGVTNFASANHKFFRDSLINFIDISPWFRIPNNIANS 281
                 699**************************************************9.445555566666666677777777777***************** PP

        GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrl 186
                  +l+ + ++   +++Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ +  ++                  ++L +fA+++++++++n l    l
  PHU24436.1 282 SVLQIIGEQdqlKKLHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTIENgelrgtpfvIGPPGYDFSSQLLSFAKAININLQINRLDNFPL 380
                 ******999777888************************55666********9766678888888877888999*******************8777** PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflealeyysalfdsleaklpreseer 282
                 ++l+ + ++ +++E+l+++ +++lh+l    ++ ++er+e+Lk++ksl Pk +v++e++  +++ns ++F++ f++ +ey + ++ds+++ +    + r
  PHU24436.1 381 QNLNSQVINSSSDETLVICAQFRLHNLN---HANPDERTELLKILKSLDPKGLVLSENNteCSCNScGDFATTFSRRVEYLWRFLDSTSVAY----KGR 472
                 ***************************8...77777889******************983355555269*******************8885....667 PP

        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + Er+++++e+ +++++ g+     +e++ekW er++++GF +  ++e++ + a++llrk++ ++++r+ee++g++ l Wk++p+ ++S W+
  PHU24436.1 473 ESEERRMMEEEAAKALTNTGEL----NERKEKWCERMRSVGFVKDVFGEDVIDGARALLRKYDsNWEMRMEEKDGCVDLWWKGQPISFCSLWK 561
                 7777777777799999999998....88888********************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MFKHQNILST HSSTRFCDTM AIDESESNSN SDSISEWLAS TLSDIPSFLD EPYSYIDDLN  60
FYGDSLWVTD QDDQIVNHNI ILDNTCNSFN NSSPVNTSTS NIPSEPIILN HPQPLDLSKK  120
RKTSSSDHNP KASRKNQNRQ MNEAEDAHAV VEPGVQLRRS TGPKRVTTKS TGNNSSNKEG  180
RWAEHLLNPC AAAITVGNMN HVQHLLYVLH ELASFTGDAN YRLAAHGLRA LTHHLSSPGS  240
LSASAGVTNF ASANHKFFRD SLINFIDISP WFRIPNNIAN SSVLQIIGEQ DQLKKLHILD  300
IGVSHGVQWP TLLEELTRRS GGPPPLVRLT VITPTIENGE LRGTPFVIGP PGYDFSSQLL  360
SFAKAININL QINRLDNFPL QNLNSQVINS SSDETLVICA QFRLHNLNHA NPDERTELLK  420
ILKSLDPKGL VLSENNTECS CNSCGDFATT FSRRVEYLWR FLDSTSVAYK GRESEERRMM  480
EEEAAKALTN TGELNERKEK WCERMRSVGF VKDVFGEDVI DGARALLRKY DSNWEMRMEE  540
KDGCVDLWWK GQPISFCSLW KM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-145GRAS family protein