PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24479.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 318aa    MW: 35777.2 Da    PI: 9.8878
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77.2e-32133189158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep++VNaKQyq+Il+RRq Rakle+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  PHU24479.1 133 DEPIFVNAKQYQAILRRRQYRAKLEAKNKL-SKARKPYLHESRHRHALNRARGPGGRF 189
                 79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MQQMSTFPGP QNSKELNFRS QDQDSSSTQS TSQSCPEVAN EGERKIHGKG IMPLQAGSFR  60
SSGKSDDSLC VSNQEHGWTY HTCQKNSAVA PFPHPDPFYH GLVSSYGNPT MVQSLMLGTV  120
SPRVPLPVDL QQDEPIFVNA KQYQAILRRR QYRAKLEAKN KLSKARKPYL HESRHRHALN  180
RARGPGGRFV NKKKPQESKF PDLINGQDDQ VPEHELQLNT KMLELDVHQS GSYKGSSSTP  240
VYSSIASGSN SAAIYHHQPL KYSAFSSCIG GTSQQNKEKD HISNPALEWK EEQKERRRRN  300
PSMSLMISRL DMLVCLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-38NF-YA family protein