PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24594.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 293aa    MW: 33751.5 Da    PI: 6.9478
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W+  a++ g++Rt+k+c++rw++yl
       PHU24594.1 25 RGPWTIEEDNLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding50.64.3e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++ +++++ +lG++ W++Ia++++ gRt++++k++w++
       PHU24594.1  78 RGNLTPQEQLMILELHSKLGNR-WSKIAHYLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MERDMSFLSK TSSSSSSDDD IELRRGPWTI EEDNLLVHYI TNHGEGRWNM LAKHAGLKRT  60
GKSCRLRWLN YLKPDVKRGN LTPQEQLMIL ELHSKLGNRW SKIAHYLPGR TDNEIKNYWR  120
TRVQKQARNL KIDANSAAFQ EMIRYLWIPR LLQKIQSSSS VMPSIQSPQS TPQDFNIEKN  180
STNTSSSSSC SSSHSSNIYN STNIMSECPK IPPRDIGDSD LNSFVKAHFP VDDNSYDVDN  240
YGQLATGNYY NDVMDYDQMS GDQNKLTGDV LSDSFWSNMD EFFYQKQDMS HCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-73MYB family protein