PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25010.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 175aa MW: 18131.2 Da PI: 8.2503

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	8e-13	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C+ PHU25010.1 7 CSGCRTILLYPRGATNVCCAVCNV 30 **********************95 PP
2	zf-LSD1	47.4	3.1e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV PHU25010.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70 ************************9 PP
3	zf-LSD1	39.8	7.4e-13	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ PHU25010.1 84 CGNCRTMLMYPCGAPSVKCAICHC 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQLVCSGC RTILLYPRGA TNVCCAVCNV LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICHCITH ISAVDGRVPV 120 PMHTSNGGVT SSAGPSSSTA TARSQNQTVV VQNPMSLDES GKLVSNVVVG VTTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-53	LSD family protein