PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25032.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25611 Da PI: 6.3066

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	53	106	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PHU25032.1 53 KRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 106 45899***********************************************95 PP
2	HD-ZIP_I/II	117.3	8.5e-38	52	143	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L+e+l+e PHU25032.1 52 RKRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKNELETNIVDKCRLENEVLKLKEQLSE 143 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MTSSMNDDQM LLISQYYPGI YTQPLPQQGE GKPRRRRKKN KDVANGEMMM MRKRKLSEEQ 60 VNLLEQSFGH EHKLESERKD KLASELGLDP RQVAVWFQNR RARWKNKKLE EEYSKLKNEL 120 ETNIVDKCRL ENEVLKLKEQ LSEAEKEMQR LQLERCDGIS SNSPTTSSLS MEAAMDPPFL 180 GEFGLDNAFY GPENTYYGPA NTYAQGLEWV NNLYMPYHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	55	RRRRKKNKDVANGEMMMMRKRK
2	35	56	RRRRKKNKDVANGEMMMMRKRK
3	36	57	RRRRKKNKDVANGEMMMMRKRK
4	37	58	RRRRKKNKDVANGEMMMMRKRK
5	52	81	RKRKLSEEQVNLLEQSFGHEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	6e-71	HD-ZIP family protein