PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25110.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 392aa MW: 42778.8 Da PI: 5.5892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	8e-10	11	53	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d+ + +a + ++ + +W++Ia ++ +tl+++k+++ PHU25110.1 11 WSREQDKAFENALATYPEDsadRWEKIATDVP-EKTLEEVKHHY 53 ******************************.9*******9 PP
2	Myb_DNA-binding	25.4	3.3e-08	225	263	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky PHU25110.1 225 NRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 263 568899999*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MTIDESSSSI WSREQDKAFE NALATYPEDS ADRWEKIATD VPEKTLEEVK HHYDLLLEDV 60 SRIESGSVPL PCYNSSSDSS PSHGGDDGTG KKTGNSGNLN GESNHGGKSM RADQERRKGI 120 AWTEDEHRSG SRLSYLCEAS AGLSILAPPD ELDDSFKLHF PDMLESGKCS VLEWYDELLE 180 CLVDSYLVPV PIAGGRYPVE LVEVHASLYR ESDNLIMLYL RGFENRLFLL GLDKYGKGDW 240 RSISRNFVVT RTPTQVASHA QKYFIRLNSM NRDRRRSSIH DITSVNTGEV SVPPGPITGQ 300 ANGSSAGSSS KPNKQQTPVR ATPLGVSIYG ETSIGQPIGG PFVSAVGTPV NLPPPTHMEY 360 GVLPPIPGAV VPGAPKNVGP LTYPMPHTSM HR

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MTIDESSSSI WSREQDKAFE NALATYPEDS ADRWEKIATD VPEKTLEEVK HHYDLLLEDV  60
SRIESGSVPL PCYNSSSDSS PSHGGDDGTG KKTGNSGNLN GESNHGGKSM RADQERRKGI  120
AWTEDEHRSG SRLSYLCEAS AGLSILAPPD ELDDSFKLHF PDMLESGKCS VLEWYDELLE  180
CLVDSYLVPV PIAGGRYPVE LVEVHASLYR ESDNLIMLYL RGFENRLFLL GLDKYGKGDW  240
RSISRNFVVT RTPTQVASHA QKYFIRLNSM NRDRRRSSIH DITSVNTGEV SVPPGPITGQ  300
ANGSSAGSSS KPNKQQTPVR ATPLGVSIYG ETSIGQPIGG PFVSAVGTPV NLPPPTHMEY  360
GVLPPIPGAV VPGAPKNVGP LTYPMPHTSM HR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-51	MYB family protein