PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU25308.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 105aa    MW: 11472.9 Da    PI: 8.9003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU25308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.92.3e-07545444
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +++  r + f k  + ++KKA  LS+ ++a+va + fss g
  PHU25308.1  5 DSEAARFTAFEKGIKSLIKKADMLSITTGARVAFVTFSSYG 45
                6788899*******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    
MKVLDSEAAR FTAFEKGIKS LIKKADMLSI TTGARVAFVT FSSYGIYAYD SSKNINEIID  60
NFLSHRKNQT TSTNVVALLP SLSGESYMMN NANVGPNNEK ASPDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-07MIKC_MADS family protein