PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25564.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 166aa MW: 18951.2 Da PI: 7.8672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv+apyfp e+p kf vhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ PHU25564.1 12 PCAACKFLRRKCLPSCVFAPYFPPEEPIKFTTVHKVFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 110 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MSSTSSYYST PPCAACKFLR RKCLPSCVFA PYFPPEEPIK FTTVHKVFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYTNYEQ 120 ANNNQIMENH QERSNFQYER RMVPSYYSSA RNNDISGDHN NISVNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-65	LBD family protein