PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25820.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 174aa MW: 18090 Da PI: 8.394

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.5	4e-12	7	29	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gCrt+L YPrGA++V+Ca+C+ PHU25820.1 7 CSGCRTVLLYPRGASNVCCAVCN 29 **********************9 PP
2	zf-LSD1	45.7	1.1e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+t+ PHU25820.1 46 CGGCRTLLMHPRGATSVRCSCCHTM 70 ***********************96 PP
3	zf-LSD1	39.1	1.2e-12	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ PHU25820.1 84 CGNCRMMLMYPCGAPSVKCAVCHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MQSQLTCSGC RTVLLYPRGA SNVCCAVCNS LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCSCCHTM NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAVCHYITN VNAGDGRAHA 120 PLPPPNGTVT AASASSSTAK ARSQNQTVVV QNPMSVDESG KLVSNVVVGV TTTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	9e-56	LSD family protein