PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26993.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 538aa MW: 56082.6 Da PI: 8.8691

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHU26993.1 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.4	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + PHU26993.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPTPPAPA PATESQPPPP 240 EAALPPAAAP KPLITPAVPP SSAVMSFISS VQNPVAKISA DLLENPNTNP AGTATKQILE 300 ETTAVASLTG SCSSSCSNGS TSSSVFGSLF ASSTASGSLP SQAPGFAVMF RAMPPDHTLE 360 MASPSSTEPI SLGLAMNHSS SIFRPAGQER RQYAPAPQPA MSATALLQKA AQMGAAATSS 420 SLLRGFGVMS STSSSNGQHE WSGRPIDANG ASLSAGLGLG LPCDAGSGLK ELMMGTPSVF 480 GPKHPTLDLL GLGMAASVGP TPGLSALITS MGSNMDMVTS AGAFGSGDFS GKDLGRNS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPTPPAPA PATESQPPPP  240
EAALPPAAAP KPLITPAVPP SSAVMSFISS VQNPVAKISA DLLENPNTNP AGTATKQILE  300
ETTAVASLTG SCSSSCSNGS TSSSVFGSLF ASSTASGSLP SQAPGFAVMF RAMPPDHTLE  360
MASPSSTEPI SLGLAMNHSS SIFRPAGQER RQYAPAPQPA MSATALLQKA AQMGAAATSS  420
SLLRGFGVMS STSSSNGQHE WSGRPIDANG ASLSAGLGLG LPCDAGSGLK ELMMGTPSVF  480
GPKHPTLDLL GLGMAASVGP TPGLSALITS MGSNMDMVTS AGAFGSGDFS GKDLGRNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2 family protein