PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27247.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 27178 Da PI: 9.9377

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng++KKA+EL +LCdaev +iifsstgklye+s+ PHU27247.1 10 RIDNSTSRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP
2	K-box	74.3	3.5e-25	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ + +q+e++ L+++++ Lq+++R+l+Ge+L L +keL +Le++Le sl+ iR+kK+++l+++i+el +k ++++en +L kk+ PHU27247.1 81 NPLTELKLWQREAEILRQQLQDLQENHRQLMGEELRGLGVKELTNLENKLEMSLRGIRTKKEQILKDEIQELTRKGSMIHQENLELYKKV 170 55677899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGKLYEFSNT 60 SMRSVIERYN KTKEEHQQLH NPLTELKLWQ REAEILRQQL QDLQENHRQL MGEELRGLGV 120 KELTNLENKL EMSLRGIRTK KEQILKDEIQ ELTRKGSMIH QENLELYKKV NLIRQENAEL 180 YEKAYGTRDA TAINGTTNYP YRFTVSREVH APIHLQLSQP DPQNFETPAR VSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-104	MIKC_MADS family protein