PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27356.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 531aa MW: 59951.7 Da PI: 8.8016

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.7e-17	175	263	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k l++s+v++ ++ lp +f+++h ++++ ++le+e+g ++e+k+i +k++ l++GW++++ a++L egD++vF+l++ ++f +v v+r+ PHU27356.1 175 KYLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESENGDEFEIKYIAEKTG----LSAGWRKYAAAQKLVEGDVLVFQLVEPTRF--KVYVIRA 263 7899***************99953..45567***********777777....*********************9876666..8888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MKIKVVHRSE PPNQERVIYP DMPMPKKEVV DEEHENQQQL GNLETVPEPD SGIPNSSNGN 60 LSLVVDGSIP ISTVTPSTQT PSSALLGKRR RKPKELIDQI STVPFRMKKR VIKKYSPASQ 120 FNNGVADTGR RSISTKQERA TADGFGSATH MKSPIIIRAE EFLSNLGNEY PSCMKYLVRS 180 HVGSCFWMGL PVPFCKNHLP RKDTPVILES ENGDEFEIKY IAEKTGLSAG WRKYAAAQKL 240 VEGDVLVFQL VEPTRFKVYV IRANDLKEVD GALSLLNLDA PAKPSDAEGA NANSIKKRQK 300 KSLPLTVVQK RRRKEGQSKQ LVPLEAQSGN DSDEVASEIL EGSRFSGLAI NFRDIKSLEE 360 FHILVNGVRI DSELPEHIRR KYYELCCSKN AFLHDRLEGL HCKLVAGMIF EVVNIADMIK 420 ACKLSTPRKE FDIWEKSLKS FELLGMRVGF LRTRLRYLLS LAFDCEGASD TKRYWEAKKE 480 WSRAEDEIRS LEMKLEELKQ VSAKYGADVE ALKSKAESYE IMFQGEVNAP W

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MKIKVVHRSE PPNQERVIYP DMPMPKKEVV DEEHENQQQL GNLETVPEPD SGIPNSSNGN  60
LSLVVDGSIP ISTVTPSTQT PSSALLGKRR RKPKELIDQI STVPFRMKKR VIKKYSPASQ  120
FNNGVADTGR RSISTKQERA TADGFGSATH MKSPIIIRAE EFLSNLGNEY PSCMKYLVRS  180
HVGSCFWMGL PVPFCKNHLP RKDTPVILES ENGDEFEIKY IAEKTGLSAG WRKYAAAQKL  240
VEGDVLVFQL VEPTRFKVYV IRANDLKEVD GALSLLNLDA PAKPSDAEGA NANSIKKRQK  300
KSLPLTVVQK RRRKEGQSKQ LVPLEAQSGN DSDEVASEIL EGSRFSGLAI NFRDIKSLEE  360
FHILVNGVRI DSELPEHIRR KYYELCCSKN AFLHDRLEGL HCKLVAGMIF EVVNIADMIK  420
ACKLSTPRKE FDIWEKSLKS FELLGMRVGF LRTRLRYLLS LAFDCEGASD TKRYWEAKKE  480
WSRAEDEIRS LEMKLEELKQ VSAKYGADVE ALKSKAESYE IMFQGEVNAP W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	113	KRRRKPKELIDQISTVPFRMKKRVIK
2	296	314	KKRQKKSLPLTVVQKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-34	B3 family protein