PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27469.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28512.4 Da PI: 9.7959

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89	2.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ PHU27469.1 9 KRIENKISRQVTFSKRRCGLLKKANEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	97.6	1.8e-32	80	174	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ e+++ e+ kL ++ e Lqr++Rh++G+dL++Lsl+eLq+Le q+++slk+iRs+Kn+l++e+i+elqkkek+l+e+n+ ++kkl+e PHU27469.1 80 MNPIDSDPKENWNLEYPKLMSRAELLQRNIRHYMGQDLDPLSLRELQSLELQIDTSLKRIRSRKNQLMHESISELQKKEKALHEQNNLINKKLKE 174 5556677789**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVELKR IENKISRQVT FSKRRCGLLK KANEISVLCD ADVALIVFST KGKLFEYSTD 60 SSMESILERY ERYSYAERKM NPIDSDPKEN WNLEYPKLMS RAELLQRNIR HYMGQDLDPL 120 SLRELQSLEL QIDTSLKRIR SRKNQLMHES ISELQKKEKA LHEQNNLINK KLKEKEKTQP 180 NSGQNSATFH VPPSHSHHQL VTNLSIGGAF GGTREMNIDG SGQAEYPGSN NNSTLMPPWM 240 LRHISNEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-76	MIKC_MADS family protein