PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27472.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 257aa MW: 29455.4 Da PI: 8.9401

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.3	1.2e-20	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l ++vk++G g+W+++ar+ g++Rt+k+c++rw +yl PHU27472.1 18 KGPWTPEEDKMLSEYVKLHGEGRWSSVARCAGLNRTGKSCRLRWVNYL 65 79********************************************97 PP
2	Myb_DNA-binding	51.3	2.6e-16	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ PHU27472.1 71 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115 6778****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MVAMMGWGAN SDQQGWRKGP WTPEEDKMLS EYVKLHGEGR WSSVARCAGL NRTGKSCRLR 60 WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE 120 KASGKQDKRK IIRQKNQPQP NCTIATIDKK LSPQAEEVVI MKSDDSNAYT NYYHKNIMDQ 180 DPVVELPPVT TCSDTSYAWT DTFLMDGLWG GLWNLDDHSL MQATNDKCKV ANIQNQPANC 240 TYATDYAVNL HNGGFIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	4e-79	MYB family protein