PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27520.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 1050aa MW: 117664 Da PI: 6.459

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	375	395	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L H+rtH PHU27520.1 375 CKECGKEFFSMKALAGHLRTH 395 ********************9 PP
2	zf-C2H2	15.6	4.5e-05	404	426	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H PHU27520.1 404 HICEKCGKGFASMRALFGHMKVH 426 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence
MVKICCIGAG YVGGPTMAVI ALKCPKIEVV VVDISVPRIT AWNSDQLPIY EPGLDDVVKQ 60 CRGKNLFFST DVETHVREAX VNRVVASMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC 120 KGLLGDKAKL SIYDPQVQED QIQRDLAMKQ FDWDHPLHLQ PMSPTTMKQQ VTVTWDAYAA 180 TKDAHAVCIL TEWDEFKTLD YQKIYDNMQK PAFLFDGRNV VDADKLREIG FIVYSIVPHY 240 SFYFPTDFPF FYEPQMEETQ ELKYICKFCN KCCDSGKSLG GHMRGHLALI SAAKKQKDNS 300 KVGSEEEEEE EAAKIHEDLS ISEQSESSTS QEKENNVSIG DDGDDSIGYG LRENPRRSWR 360 VSDFKNCSLE MKNLCKECGK EFFSMKALAG HLRTHSKKGI EKCHICEKCG KGFASMRALF 420 GHMKVHSKRS RVDDQDSELS KQSLSDFDNI CPIRKKRSKI KYKIDVNSSF SGVKESSSAI 480 SEVDEVEEAA RCLLMLSVGV RDWDEYISVL ENSKNENVIL ESESSFHRAK GISAADAFTV 540 KHLSHAVFSD SGCVDDYEKN YEIAEFSDEL MLVNTEITKV CYSTDMQFEN DPSSSVVMED 600 FPSLNSCPLK NAGVDFHPET NLLVSEPVKS KKHKCPVCFK VFPSGQSLGG HKRAHYTGFT 660 ESKTKEPMVK KLDDLADNHK AFDLNTPVNA VDVGENDVEL KLCIVTSLLR RIAALESSLR 720 RTSSPPRTRQ TLRDAAARTI QTHFRAFLAR RSRTLRLLKQ LASIKATLYV LKSLVSGKTH 780 FDARAVKHKA LDLLVRLDSI EGDDPLIRDG KRSISNELAR FVKAINGVTI ISSRVVKNVG 840 GGYKARVFST DRKIEFDTNR SEAIDKFVAS VNESEDEEEE EEDQQNTRLS DTEKSGILLT 900 RCGGLAGSHG GVKPKRKKSV TFAENGGAYR VFHSSLEPAS VGNVHEKESF DDEIELIKNL 960 NKRVEKLGMA SKDCQVAEQE DSESSGSSDN ERDPNQISRK DGYYERNVRD ENDNEIENES 1020 FLFSAPLPVK MEGRAADHIN RKKGVKIVGN

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence

MVKICCIGAG YVGGPTMAVI ALKCPKIEVV VVDISVPRIT AWNSDQLPIY EPGLDDVVKQ  60
CRGKNLFFST DVETHVREAX VNRVVASMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC  120
KGLLGDKAKL SIYDPQVQED QIQRDLAMKQ FDWDHPLHLQ PMSPTTMKQQ VTVTWDAYAA  180
TKDAHAVCIL TEWDEFKTLD YQKIYDNMQK PAFLFDGRNV VDADKLREIG FIVYSIVPHY  240
SFYFPTDFPF FYEPQMEETQ ELKYICKFCN KCCDSGKSLG GHMRGHLALI SAAKKQKDNS  300
KVGSEEEEEE EAAKIHEDLS ISEQSESSTS QEKENNVSIG DDGDDSIGYG LRENPRRSWR  360
VSDFKNCSLE MKNLCKECGK EFFSMKALAG HLRTHSKKGI EKCHICEKCG KGFASMRALF  420
GHMKVHSKRS RVDDQDSELS KQSLSDFDNI CPIRKKRSKI KYKIDVNSSF SGVKESSSAI  480
SEVDEVEEAA RCLLMLSVGV RDWDEYISVL ENSKNENVIL ESESSFHRAK GISAADAFTV  540
KHLSHAVFSD SGCVDDYEKN YEIAEFSDEL MLVNTEITKV CYSTDMQFEN DPSSSVVMED  600
FPSLNSCPLK NAGVDFHPET NLLVSEPVKS KKHKCPVCFK VFPSGQSLGG HKRAHYTGFT  660
ESKTKEPMVK KLDDLADNHK AFDLNTPVNA VDVGENDVEL KLCIVTSLLR RIAALESSLR  720
RTSSPPRTRQ TLRDAAARTI QTHFRAFLAR RSRTLRLLKQ LASIKATLYV LKSLVSGKTH  780
FDARAVKHKA LDLLVRLDSI EGDDPLIRDG KRSISNELAR FVKAINGVTI ISSRVVKNVG  840
GGYKARVFST DRKIEFDTNR SEAIDKFVAS VNESEDEEEE EEDQQNTRLS DTEKSGILLT  900
RCGGLAGSHG GVKPKRKKSV TFAENGGAYR VFHSSLEPAS VGNVHEKESF DDEIELIKNL  960
NKRVEKLGMA SKDCQVAEQE DSESSGSSDN ERDPNQISRK DGYYERNVRD ENDNEIENES  1020
FLFSAPLPVK MEGRAADHIN RKKGVKIVGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	1e-15	C2H2 family protein