PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27522.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 932aa MW: 103684 Da PI: 5.5202

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	603	623	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH PHU27522.1 603 CKECGKEFSSLKALAGHLRTH 623 ********************9 PP
2	zf-C2H2	15.8	3.9e-05	632	654	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H PHU27522.1 632 HICEKCGKGFASMRALFGHMKVH 654 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence
MVKICCIGAG YVGGPTMAVI ALKCPKIEVV VVDISVPRIT AWNSDQLPIY EPGLDDVVKQ 60 CRGKNLFFST DVETHVREAD IVFVSVNTPT KTRGLGAGKA ADLTYWESAA RMIADVSKSD 120 KIVVEKSTVP VKTAEAIEKI LTHNSKGINF QILSNPEFLA EGTAIEDLFK PDRVLIGGRE 180 TPGGQKAIQA LKDVYAHWVP EANIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT 240 GANVSQVAYA VGKDLRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI 300 KINDYQKSRF VNRVVASMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAKL 360 SIYDPQVQED QIQRDLAMKQ FDWDHPLHLQ PMSPTTMKQQ VTVTWDAYAA TKDAHAVCIL 420 TEWDEFKTLD YQKIYDNMQK PAFLFDGRNV VDADKLREIG FIVYSIVPHY SFYFPTDFPF 480 FYEPQMEETQ ELKYICKFCN KCCDSGKSLG GHMRGHLALI SAAKKQKDNS KVGSEEEEEA 540 ANIHEDLSIS EQSESSTSQE KENNISIGDD GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK 600 NLCKECGKEF SSLKALAGHL RTHSKKGIEK CHICEKCGKG FASMRALFGH MKVHSKRSTG 660 DDQDSELSKQ SLSDFDNICP IRKKRSKIKY KIDVNSSFSG LNESSSAISE VDEVEEAARC 720 LLMLSVGVRD WDEYISILES SKDENVNLES EPSFYCAKGI SAADAFTVKH LSHAVFSDSG 780 CVDDYEKNYE IAEFSDELML VNTEITKVCY STDMQFENDP SSSVVMEEFP FLNSCSLKNA 840 ELEPVKSKKH KCPVCFKVFP SGQSLGGHKR AHYTGFTESK TKEPMVKKLD DLVDNHKAFD 900 LNTPVNAVDV GENDVELKLW WVGSSDGLMM SN

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence

MVKICCIGAG YVGGPTMAVI ALKCPKIEVV VVDISVPRIT AWNSDQLPIY EPGLDDVVKQ  60
CRGKNLFFST DVETHVREAD IVFVSVNTPT KTRGLGAGKA ADLTYWESAA RMIADVSKSD  120
KIVVEKSTVP VKTAEAIEKI LTHNSKGINF QILSNPEFLA EGTAIEDLFK PDRVLIGGRE  180
TPGGQKAIQA LKDVYAHWVP EANIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT  240
GANVSQVAYA VGKDLRIGPK FLNASVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI  300
KINDYQKSRF VNRVVASMFN TVSNKKVAIL GFAFKKDTGD TRETPAIDVC KGLLGDKAKL  360
SIYDPQVQED QIQRDLAMKQ FDWDHPLHLQ PMSPTTMKQQ VTVTWDAYAA TKDAHAVCIL  420
TEWDEFKTLD YQKIYDNMQK PAFLFDGRNV VDADKLREIG FIVYSIVPHY SFYFPTDFPF  480
FYEPQMEETQ ELKYICKFCN KCCDSGKSLG GHMRGHLALI SAAKKQKDNS KVGSEEEEEA  540
ANIHEDLSIS EQSESSTSQE KENNISIGDD GDDSIGYGLR ENPRRSWRVS DFKNCSLEMK  600
NLCKECGKEF SSLKALAGHL RTHSKKGIEK CHICEKCGKG FASMRALFGH MKVHSKRSTG  660
DDQDSELSKQ SLSDFDNICP IRKKRSKIKY KIDVNSSFSG LNESSSAISE VDEVEEAARC  720
LLMLSVGVRD WDEYISILES SKDENVNLES EPSFYCAKGI SAADAFTVKH LSHAVFSDSG  780
CVDDYEKNYE IAEFSDELML VNTEITKVCY STDMQFENDP SSSVVMEEFP FLNSCSLKNA  840
ELEPVKSKKH KCPVCFKVFP SGQSLGGHKR AHYTGFTESK TKEPMVKKLD DLVDNHKAFD  900
LNTPVNAVDV GENDVELKLW WVGSSDGLMM SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-12	C2H2 family protein