PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27645.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 159aa    MW: 18288.7 Da    PI: 8.1044
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.6e-38111121101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n+ ++l++l++e+ + dam+s+++++++r + PvyG+v+ i+ l+qq + + +el++++
  PHU27645.1  11 SCAACKYQRRKCTSQCVLAPYFPANQPKKFQNAHRLFGVRNIARILEQLDDEDqKADAMKSIIFQSDMREKFPVYGCVECIFYLRQQFQIALQELQYVN 109
                 6************************************************666649*****************************************999 PP

      DUF260  99 eel 101
                 ++l
  PHU27645.1 110 AQL 112
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MTVKGVTSRV SCAACKYQRR KCTSQCVLAP YFPANQPKKF QNAHRLFGVR NIARILEQLD  60
DEDQKADAMK SIIFQSDMRE KFPVYGCVEC IFYLRQQFQI ALQELQYVNA QLDIYRQQQQ  120
HSSESSVNNG RLSMLPFFSS TEAESISQGI TYSDFDVSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-43LBD family protein