PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27646.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 151aa    MW: 17545 Da    PI: 8.8181
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.7e-3891091100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk+ rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + Pv G+v+ i++l+qql+ + +el++++
  PHU27646.1   9 SCAACKYRRRKCTPKCVLASYFPADQPKKFQNAHRLFGVRNIVRTLEQLDDEDqKADAMKSIIFESDMREKFPVFGCVECISHLRQQLQIALQELQYVN 107
                 6************************************************666649*****************************************999 PP

      DUF260  99 ee 100
                 ++
  PHU27646.1 108 RQ 109
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MTGGTSRVSC AACKYRRRKC TPKCVLASYF PADQPKKFQN AHRLFGVRNI VRTLEQLDDE  60
DQKADAMKSI IFESDMREKF PVFGCVECIS HLRQQLQIAL QELQYVNRQL DIYKRRQQQQ  120
QHSTESSVGN GMLMVPFFSS IEDEYSRNHT S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-39LBD family protein