PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27936.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 241aa MW: 26781.1 Da PI: 9.4398

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.6	5.2e-24	148	191	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e PHU27936.1 148 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKHVE 191 79****************************************97 PP
2	QLQ	37.5	7.1e-14	89	124	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq++ +Q + Ky++a++PvPp+Ll+++++ PHU27936.1 89 PFTASQLQEFQRQSIICKYIMASMPVPPQLLLPLPN 124 9********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGNGENSELL DLKMKTSTES SYPYKSSLFI SPSSHSGDDG GSGCGGPGDF VGSGIYDVVS 60 SDAALSSRPL QQPFNYTARG SMGLFGKVPF TASQLQEFQR QSIICKYIMA SMPVPPQLLL 120 PLPNHPSPAH LPQSNTSGLD LKFSSGSDPE PWRCKRTDGK KWRCSRDVAP DQKYCERHAH 180 KSKPRSRKHV EIHNSNSNSN RHPPAPKSNN KHHSLQFPSD QTRFGSFKFQ FFMWTLLDFL 240 C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-25	GRF family protein