PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27946.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 429aa MW: 46360.1 Da PI: 7.7537

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.8e-26	201	269	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.................vclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF+ ++kdAAk+Lg vc+T++K iCRq+GI+RWP+Rki+++ PHU27946.1 201 AEKTISLEVLQQYFAESVKDAAKSLGagviadliillnvlvitVCPTTMKHICRQHGISRWPSRKINKV 269 589****************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MTTTYVVQWN STFCKTNRCK RGPLDTFPIH GLWPANATGH SIMCPQGAES DVDTLMNGDQ 60 KLEADLKAIW PNLVAAGNGK DKTETLALVR ILFDAWDIQL SAGVDSTTLT STCVVTKKFL 120 SIRKLGSRFE SVPTTKSFPQ PSSVANRRTR PDLMEEQQSP VALNGAKGAE GVNATAEAHN 180 HASFSENKQT GKKSERKRGE AEKTISLEVL QQYFAESVKD AAKSLGAGVI ADLIILLNVL 240 VITVCPTTMK HICRQHGISR WPSRKINKVN QSLSKLKLVI ESVQGADGTF SLTSLAPNSL 300 PVAVGSVSWT AGMTDSPCKA SEYYEKKNEF SNHGTPASHE EAEPSNQMLG SRIIANEELS 360 PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPCP ANESSPQNEL VNSPTQESVM 420 KVEGSLEPV

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MTTTYVVQWN STFCKTNRCK RGPLDTFPIH GLWPANATGH SIMCPQGAES DVDTLMNGDQ  60
KLEADLKAIW PNLVAAGNGK DKTETLALVR ILFDAWDIQL SAGVDSTTLT STCVVTKKFL  120
SIRKLGSRFE SVPTTKSFPQ PSSVANRRTR PDLMEEQQSP VALNGAKGAE GVNATAEAHN  180
HASFSENKQT GKKSERKRGE AEKTISLEVL QQYFAESVKD AAKSLGAGVI ADLIILLNVL  240
VITVCPTTMK HICRQHGISR WPSRKINKVN QSLSKLKLVI ESVQGADGTF SLTSLAPNSL  300
PVAVGSVSWT AGMTDSPCKA SEYYEKKNEF SNHGTPASHE EAEPSNQMLG SRIIANEELS  360
PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPCP ANESSPQNEL VNSPTQESVM  420
KVEGSLEPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	9e-40	Nin-like family protein