PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28332.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24557.2 Da    PI: 9.9268
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.9e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifss+gklye+ss
  PHU28332.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLYEFSS 59
                79***********************************************96 PP
2K-box61.24.3e-21871731298
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++e+l++e+a + +++e L+ ++R+llG++Les +l eL+q+e+qLe++l++iR++Kn l++eqi +l++  k l +en +L+k+ 
  PHU28332.1  87 LTTEHLKEEIASMTRKLEFLEDSKRKLLGQGLESSTLDELEQVEEQLERGLSNIRARKNLLFTEQIAQLKEEGKILLKENADLKKRS 173
                 5689*******************************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRGKTQLKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSS RGKLYEFSSS  60
STHKTIERYQ KNDKSLGQFN RKLPDQLTTE HLKEEIASMT RKLEFLEDSK RKLLGQGLES  120
STLDELEQVE EQLERGLSNI RARKNLLFTE QIAQLKEEGK ILLKENADLK KRSEMLSLTL  180
TTIAKEKKDD GRQIMEVETE LFIGLPDTRK NSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-66MIKC_MADS family protein