PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28472.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11709.3 Da    PI: 10.157
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.4e-121563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k   +v fskR++g+  KA+E S L++a+v  i+f + gk + y
  PHU28472.1 15 KLIESKEACTVAFSKRKKGLGEKAKEYSNLTGADVGFILFTQAGKPHSY 63
                569*****************************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MDKRGGKGRQ KIEMKLIESK EACTVAFSKR KKGLGEKAKE YSNLTGADVG FILFTQAGKP  60
HSYGSPSIEK VIDKFHELKQ NDSQQNHTNM SKTNAFEAFE DLRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-19M-type_MADS family protein