PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28478.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19602.3 Da    PI: 10.1011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-121563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r+v fskR++g+ KK +E S L++a++  i+f + gk + y
  PHU28478.1 15 KLIESKEARTVAFSKRKHGLDKKPKEYSYLTGADIDSILFTQAGKSHSY 63
                569*****************************************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MDKRGGKGRQ KIELKLIESK EARTVAFSKR KHGLDKKPKE YSYLTGADID SILFTQAGKS  60
HSYGSPSVEK VIDKFHELKQ NNSQQNHTDM SKTNVFEAFE DLRKEVQAFK KKDHGSELPT  120
DKYMLENRLK QFEAYKSRLD KIKNQIKGDV PAEQFNFISE VALKLEKMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-17M-type_MADS family protein