PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28490.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 375aa MW: 42373.4 Da PI: 6.7871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H PHU28490.1 127 FQCKACKKVFNSHQALGGHRASH 149 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MRSHGAAGEN NNRNYGEQVS EPKYTINNFR RDKSESQKHS YNLRTNSNRL VAGNNRSTSD 60 DRVDVEKSEY YYGRDGKEKQ HSSREEEDLA NCLVMLSSKS CDLSDDNNNN NKSESRNKAK 120 EVEKGMFQCK ACKKVFNSHQ ALGGHRASHK KVKGCYAAKL DVDDDDTTNS NNDDNDIDED 180 LMISTGDLIL HQESNSSQSQ SPSSSSFSRK RSRVHQCSIC QRVFSSGQAL GGHKRCHWLT 240 SSMPETTFIP SFQEIQYHNQ EQVLYNKPIF TNHHQPLDLN FPAQLGNPAE VGLKLHSNPF 300 EQESPKSSLQ LWTDQQVDIN QNENQNHKCK YSLSREEDIK SKEAKLSNLK DVNLDGGSSW 360 LQVGIGPTPD ILPTL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MRSHGAAGEN NNRNYGEQVS EPKYTINNFR RDKSESQKHS YNLRTNSNRL VAGNNRSTSD  60
DRVDVEKSEY YYGRDGKEKQ HSSREEEDLA NCLVMLSSKS CDLSDDNNNN NKSESRNKAK  120
EVEKGMFQCK ACKKVFNSHQ ALGGHRASHK KVKGCYAAKL DVDDDDTTNS NNDDNDIDED  180
LMISTGDLIL HQESNSSQSQ SPSSSSFSRK RSRVHQCSIC QRVFSSGQAL GGHKRCHWLT  240
SSMPETTFIP SFQEIQYHNQ EQVLYNKPIF TNHHQPLDLN FPAQLGNPAE VGLKLHSNPF  300
EQESPKSSLQ LWTDQQVDIN QNENQNHKCK YSLSREEDIK SKEAKLSNLK DVNLDGGSSW  360
LQVGIGPTPD ILPTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	4e-22	C2H2 family protein