PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28538.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 297aa    MW: 32655.2 Da    PI: 7.3797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19210261155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAaka+++a+  ++g
  PHU28538.1 210 THYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFVTAIEAAKAYDKAAFTMRG 261
                 68********.**********9...4334*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MEYVDEIFAL EKIRNHLLGE FSPKTLKFGA GLTSGKCSYS ATDSTYDGSF NTLNCPLNYS  60
YSAINSGQCE SFSSLNCPTV MESSYSESAS SDSLPFDFFA DFEADFFQFG TNSSSESTKA  120
VHNQTNVSKL ESEPSISSSD YEFESKPQVI IDLTSPKSSS ASDRKPKLKI DLPSVKNFEM  180
INFGNSINST QSNPIVSVSV QQPRKTEGKT HYRGVRQRPW GKYAAEIRDP NRRGSRVWLG  240
TFVTAIEAAK AYDKAAFTMR GSKAILNFPL EVEKGATVSA AVNGGVKRRR ESEGDRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ERF family protein