PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28619.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 380aa MW: 42179 Da PI: 5.38

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.3	8.6e-08	57	92	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C CGn a+ C ++ C+ CC C hv PHU28619.1 57 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCVIHVL 92 568*******************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MAASSPALSN HSADNAASPS PSPATANVPS VNTTTTAAAL SSLPTTNASK NLRGLNKPKC 60 IKCGNVARSR CPFQSCKSCC AKAQNPCVIH VLKGGSTLPE KLPASGSPVV DQQSTEPSHS 120 GSSHRTASLR QLSSNFAQFN NLQTPLRSRR PLTRKDAQVI NEWRFMKLKE YRDNNIAAEN 180 EAFDRYMQNV GLLEEVFAVN SSEDEENEDG STEDDNEAMI NRVKLQLRSD PTRIENTRKR 240 MQYVIDQGLR KLRKLDSGDN ATDLSDLDAL GRKKKVKTAE AEHVMAFTEL IDKLNKARNE 300 EDLKACWEMK SQLFNQPKKE NQTESEDAEA PIEESLKDSV PPTMPWGHPP PKWFSTTTVD 360 DEELCRINAE FDSLEDIEEL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MAASSPALSN HSADNAASPS PSPATANVPS VNTTTTAAAL SSLPTTNASK NLRGLNKPKC  60
IKCGNVARSR CPFQSCKSCC AKAQNPCVIH VLKGGSTLPE KLPASGSPVV DQQSTEPSHS  120
GSSHRTASLR QLSSNFAQFN NLQTPLRSRR PLTRKDAQVI NEWRFMKLKE YRDNNIAAEN  180
EAFDRYMQNV GLLEEVFAVN SSEDEENEDG STEDDNEAMI NRVKLQLRSD PTRIENTRKR  240
MQYVIDQGLR KLRKLDSGDN ATDLSDLDAL GRKKKVKTAE AEHVMAFTEL IDKLNKARNE  300
EDLKACWEMK SQLFNQPKKE NQTESEDAEA PIEESLKDSV PPTMPWGHPP PKWFSTTTVD  360
DEELCRINAE FDSLEDIEEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-93	SRS family protein