PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28673.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 155aa MW: 16412.1 Da PI: 8.265

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.3	3.5e-10	43	62	6	25
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 +lL YP GA+sV+Ca+C++V PHU28673.1 43 NLLLYPVGATSVCCAVCNAV 62 69*****************9 PP
2	zf-LSD1	46.7	5.3e-15	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV PHU28673.1 77 CGGCHTLLMYIRGATSVQCSCCHTV 101 ************************9 PP
3	zf-LSD1	41.7	1.9e-13	115	139	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V PHU28673.1 115 CGNCRMLLMYQYGARSVKCAVCNFV 139 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
LHNASSACSV SLHHQPHLHH LLTLSGETAS RSSRIKPVHK IINLLLYPVG ATSVCCAVCN 60 AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM 120 LLMYQYGARS VKCAVCNFVT SVGVSTSAAE QKFNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-60	LSD family protein