PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28705.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 560aa    MW: 62344.1 Da    PI: 6.1554
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.6e-27316370156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k +++WtpeLH++Fv+aveqL G+++A+P++il++mkv+gLt+++++SHLQkYR++
  PHU28705.1 316 KVKVDWTPELHKKFVQAVEQL-GIDQAIPSRILDVMKVEGLTRHNIASHLQKYRMH 370
                 5689*****************.********************************96 PP
2Myb_DNA-binding42.61.4e-13319368248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e+++++v+av+qlG +   +++I   m  +g+t+ ++ s++qky+
       PHU28705.1 319 VDWTPELHKKFVQAVEQLGIDqaIPSRILDVMKvEGLTRHNIASHLQKYR 368
                      57***********************************************7 PP
3Response_reg31.31e-11201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ lek +y +v ++ + +eal  +  k   +++ ++ ++  + dG+  l+ +++++ +lp i+ +   + +++ +++ +Ga 
    PHU28705.1  20 VLLLDEDSNSAAEMKSRLEKMDY-IVYTFCNESEALSAISSKSegFHVAIVEVSAGDNDGV--LQFLESAK-NLPTIMTSNIHSLSTMMKCIALGAV 112
                   799999999**************.***************777777************9995..66666666.9*******9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp + ++l +
    PHU28705.1 113 EFLQKPLSDDKLKN 126
                   **********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    
MICIEDELLG WKDFPKGLKV LLLDEDSNSA AEMKSRLEKM DYIVYTFCNE SEALSAISSK  60
SEGFHVAIVE VSAGDNDGVL QFLESAKNLP TIMTSNIHSL STMMKCIALG AVEFLQKPLS  120
DDKLKNIWQH VVHKAFNARK DVSGPLEPVK ESLLSMLQLQ PEKGEPDDKS SNGTEPLIAV  180
ADNNTEQSSG CDKYPAPSTP QLKQGVRSVD DSDCHDHTIF SADQDSGEHD EDIILKEENG  240
SSPHQTMEAD IATFSQINDC ADNSDGSSPH QKTEADIATT SSQSKDCPDN SISHSAEPSK  300
ASGPHSSSGT KSNKKKVKVD WTPELHKKFV QAVEQLGIDQ AIPSRILDVM KVEGLTRHNI  360
ASHLQKYRMH RRQILPREVE RRWPHPQPRD SVQRNYYPHK PVMTFPPYHS NHVAPAGQCY  420
PAWVPPASYP NGLQVWGSPY YPGWQPAETW HWKPHPGLLA DTWGSPVMPP SFGSYPPYPQ  480
NAGMYQSHGM HNRYSMLEKS FDVHPAEEVI DKVVKEAITK PWLPLPLGLK PPSMEGVLDE  540
LSRQGISTVP PRINGSRCWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-129ARR-B family protein