PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28877.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 480aa MW: 53757.9 Da PI: 5.7403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	9e-14	303	346	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri+++++ Lr l+P+ + K++K++iL A++YI++Lq PHU28877.1 303 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 346 57*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MERALEWLRP LVDSKNWEYC VVWKLGDDPS RFIEWMGCCC SGANGVDVNM KKENGGKQKV 60 TALCKDIQVQ HPIRTRACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA EISNSSLSHE 120 LKGTLVLIPV AGGLVELYSS KLIYKDQKTI NFIINRFKLG SEEANSSIAR KEDQVLDFFS 180 YEKLNFTAPL MQYATSFPST APHISQVSES SANPSIQGSS TGSTRSNELT LCHSPCDHLS 240 QNIPLSQSTE GYFEHTELQC SGNLSRMEGS AFPWKQENYI FAGDMFAVGK KRQKGPYQSK 300 NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKVK LYETELNEIE 360 AEFTNNEAAE MVLSDMTEIS KVTEPTNEKT QSSNTTNRTR MELEVNQIDA RKFLLKVSGS 420 HKTGRFTQLM EAMSYLGLEI VNVSFTTSGG EILSIFITEV NVDNVVDSQK LRSSLMELTS

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MERALEWLRP LVDSKNWEYC VVWKLGDDPS RFIEWMGCCC SGANGVDVNM KKENGGKQKV  60
TALCKDIQVQ HPIRTRACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA EISNSSLSHE  120
LKGTLVLIPV AGGLVELYSS KLIYKDQKTI NFIINRFKLG SEEANSSIAR KEDQVLDFFS  180
YEKLNFTAPL MQYATSFPST APHISQVSES SANPSIQGSS TGSTRSNELT LCHSPCDHLS  240
QNIPLSQSTE GYFEHTELQC SGNLSRMEGS AFPWKQENYI FAGDMFAVGK KRQKGPYQSK  300
NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKVK LYETELNEIE  360
AEFTNNEAAE MVLSDMTEIS KVTEPTNEKT QSSNTTNRTR MELEVNQIDA RKFLLKVSGS  420
HKTGRFTQLM EAMSYLGLEI VNVSFTTSGG EILSIFITEV NVDNVVDSQK LRSSLMELTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	295	GKKRQKG
2	290	309	KKRQKGPYQSKNLVTERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	2e-48	bHLH family protein