PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28935.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 855aa MW: 96191.9 Da PI: 6.3074

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.8	1.5e-12	633	677	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +eeL ++F++n ps++ re L+kklg++ ++V WF+N R+ PHU28935.1 633 PDAVEELRRVFAENELPSRDVRENLSKKLGIEYEKVNKWFKNARY 677 6889***************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence
MKSNPLAELI NLKQNGSVED YQRDFQMMLA RASFVRVDQE VDMFTAGLVD LIHLDVELQN 60 LSNLVQAMSL SRAFEKKIQI SSSTQRGYNS TSKTTAAAVI PGAKVIATNP FVKRLTRAEM 120 AARRAKGLCY NYSGEPSISL HAITNKQHAD NMQLQATIDK KLEYEDVPTN SGEPAISLHA 180 IIGKQHADTM QLQVSSGCKL HDVFHVSLLK PFKGELPTTP PTLPPVEEGR VVPTPCSVLK 240 SRLNHGNWEI LVQWCGLFVE DSTWETVHHF KSAFPDFKLE DKLFLREGDN VIDAFVGKQY 300 STQELIGLIG LIMIREKIRP EKELQRAKKQ ILNCKLGIRE IVHHLDLLSS AGQIDDSAIA 360 PDGSVHHDHI ICAKCKLQEA FSDNDIILCD EQSFTSEIYN FCLAKWLLAH TFMKTYSKTN 420 DNLQYHQMMK AGFANFASDI FKEEALRPEG EESLLCPEQD WPSDDSEDDD YDPEKVANSH 480 SSTDSFDSGS SSEGSSGSML ESLEDELLAL TGKPEGGSSG KDYLSKQIAG LDYEETTDVD 540 VLSAPRQRRA VDYIKLNDEM FGKHAPAIEQ NSEDEDWGPG KRKRGRKESE SDAASTLITL 600 FKSEKSCSEK TANELEKESF GRPAKREIFR IPPDAVEELR RVFAENELPS RDVRENLSKK 660 LGIEYEKVNK WFKNARYIAL KARKQAESTK PCEVTSPTTS VGRIPDTVKG EPADHISSSD 720 AEENAAQAPK NLGRSPNEET PNLVIRPSKK KHVKKAVKQS TYKVETVVEF GDDMSLKLLR 780 ERAKKERRKL NFKEREKIQE AEAEMQKLCR IKDKIARLQD ILLRFPNHRC RRAGASSLDE 840 SLVVFIPFAE LQDKR

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence

MKSNPLAELI NLKQNGSVED YQRDFQMMLA RASFVRVDQE VDMFTAGLVD LIHLDVELQN  60
LSNLVQAMSL SRAFEKKIQI SSSTQRGYNS TSKTTAAAVI PGAKVIATNP FVKRLTRAEM  120
AARRAKGLCY NYSGEPSISL HAITNKQHAD NMQLQATIDK KLEYEDVPTN SGEPAISLHA  180
IIGKQHADTM QLQVSSGCKL HDVFHVSLLK PFKGELPTTP PTLPPVEEGR VVPTPCSVLK  240
SRLNHGNWEI LVQWCGLFVE DSTWETVHHF KSAFPDFKLE DKLFLREGDN VIDAFVGKQY  300
STQELIGLIG LIMIREKIRP EKELQRAKKQ ILNCKLGIRE IVHHLDLLSS AGQIDDSAIA  360
PDGSVHHDHI ICAKCKLQEA FSDNDIILCD EQSFTSEIYN FCLAKWLLAH TFMKTYSKTN  420
DNLQYHQMMK AGFANFASDI FKEEALRPEG EESLLCPEQD WPSDDSEDDD YDPEKVANSH  480
SSTDSFDSGS SSEGSSGSML ESLEDELLAL TGKPEGGSSG KDYLSKQIAG LDYEETTDVD  540
VLSAPRQRRA VDYIKLNDEM FGKHAPAIEQ NSEDEDWGPG KRKRGRKESE SDAASTLITL  600
FKSEKSCSEK TANELEKESF GRPAKREIFR IPPDAVEELR RVFAENELPS RDVRENLSKK  660
LGIEYEKVNK WFKNARYIAL KARKQAESTK PCEVTSPTTS VGRIPDTVKG EPADHISSSD  720
AEENAAQAPK NLGRSPNEET PNLVIRPSKK KHVKKAVKQS TYKVETVVEF GDDMSLKLLR  780
ERAKKERRKL NFKEREKIQE AEAEMQKLCR IKDKIARLQD ILLRFPNHRC RRAGASSLDE  840
SLVVFIPFAE LQDKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	9e-39	HB-PHD family protein