PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29165.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 275aa MW: 28270 Da PI: 7.5023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.1e-40	46	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ PHU29165.1 46 PCGACKFLRRKCVANCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 144 7*********************9989******************************************************************999 PP DUF260 99 ee 100 ++ PHU29165.1 145 AH 146 86 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MSSNPSSSTG GTVTTTVGGV GGGTSGSTSS GGGGGGGGGG GSGGGPCGAC KFLRRKCVAN 60 CIFAPYFDSE QGAAHFAAVH KVFGASNVSK LLLHIPVHKR LDAVVTICYE AQARLRDPVY 120 GCVAHIFALQ QQVVNLQAEL SYLQAHLATL ELPTPPPPPP PPQQPPTMLQ QPALTIADLP 180 TAGSSLPAAY DLSSLFDPMV QPSWAMQQQS RPPPPPPMEP RQFVGSTRPP VDMSPSTSGG 240 GSGDLQELAR ELLHRHGSPT VPCTEPSALP PPQTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	8e-79	LBD family protein