PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29231.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 270aa MW: 30919.3 Da PI: 9.8605

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.5	5.6e-31	23	71	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs +gklye+ PHU29231.1 23 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 71 79**********************************************9 PP
2	K-box	101.5	1.1e-33	94	183	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke+ l + nk+L+ k+ PHU29231.1 94 CGERETQSWYQEVSKLKAKFEALQRTQRHLLGEDLGTLSVKELQNLEKQLEGALAQARQRKTQIMMEQMEELRRKERHLGDVNKQLKIKV 183 56889*********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MVRFLLPQKR RKTKMGRGRV ELKRIENKIN RQVTFSKRRN GLLKKAYELS VLCDAEVALI 60 IFSGRGKLYE FGNAGITKTL ERYQRCCINP QDNCGERETQ SWYQEVSKLK AKFEALQRTQ 120 RHLLGEDLGT LSVKELQNLE KQLEGALAQA RQRKTQIMME QMEELRRKER HLGDVNKQLK 180 IKVSLELSSF ETEGQGLRAL PNFPWSCNAS AEAGSSSFHV HHHSQSNHMD CDQPDPVLQI 240 GYQQYMSADG ASGSRSNMAI ENNIIHGWGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-102	MIKC_MADS family protein