PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU29552.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 246aa    MW: 28166.3 Da    PI: 9.3407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU29552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.6e-1883133255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +ykGVr+++ +g+++AeIrdp     r +r +lg++ t+e+Aa a+++ + +l+g
  PHU29552.1  83 RYKGVRRRP-WGKYAAEIRDPHR---RgARLWLGTYETPEDAALAYDRTAYRLRG 133
                 8********.**********743...24*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MQGLSLDFEQ NYLDNMQYLF NDPDFSQILS EIQSPRQYSS IPDHQNGIFQ QNIHQENQDS  60
VPISQETTKN VTEPTLLDDR PKRYKGVRRR PWGKYAAEIR DPHRRGARLW LGTYETPEDA  120
ALAYDRTAYR LRGTSALLNF PHLIESNVTE INRVRPRRRP RTPEICSRCS SPPPSIGDNN  180
QSNNNNTDGP SSKRRNVELI NSLATANNLD SQNRLVTGKK ISLACEDKRV PEHVAPRDNL  240
IKKTTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RPRRRPR
2156162PRRRPRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-33ERF family protein