PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29974.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 542aa MW: 60233 Da PI: 7.8189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.6e-09	361	409	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PHU29974.1 361 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 409 58***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDVSSKNDTE RQKRNEDATS FQTPNMSLDW QLSGSNFTNA SMEMIPYSNS FVDSIFPTIS 60 DRTTNSPHLS FYGNNAQINH CTVNQHETAA IGSGPLRGGV ETVDRTVVMS WNPPNVMLKG 120 SMFVPPIPGT IPQSLAQLPA DLGFIERAAR FSCFSGGNFS DMMNPFSVPE STKPCYRGLA 180 PTWRTKEVFA RNRLNSTSAV DPRKQNMRSK VGSSKNVSLP NENKTNEQSP LKNEKKNEVF 240 SRSQDERNES VGLSGNESDE AECSGHQEEM GSALLESSVK GLDSRKRRRY GQDTELDRMK 300 GAQQLPAEPE REQTKTQKGD GRLNSPSSKH GRKNSKQRSQ SSDPTKEEYI HVRARRGQAT 360 NSHSLAERVR REKISERMKF LQDLVPGCDK VTGKAVMLDE IINYVQSLQR QVEFLTMKLS 420 TVNPWLDFNL GLLAKDSQAG PSSSLAFPSD NTAITYTSLH GWQSGLLQSG FPGDGNCIDV 480 FRRSINSQFA SMSDGYSDPS SQVPNVWDNQ LHNVVKMGFN SSMPLDCQDL SSLPPDQMKA 540 ER

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDVSSKNDTE RQKRNEDATS FQTPNMSLDW QLSGSNFTNA SMEMIPYSNS FVDSIFPTIS  60
DRTTNSPHLS FYGNNAQINH CTVNQHETAA IGSGPLRGGV ETVDRTVVMS WNPPNVMLKG  120
SMFVPPIPGT IPQSLAQLPA DLGFIERAAR FSCFSGGNFS DMMNPFSVPE STKPCYRGLA  180
PTWRTKEVFA RNRLNSTSAV DPRKQNMRSK VGSSKNVSLP NENKTNEQSP LKNEKKNEVF  240
SRSQDERNES VGLSGNESDE AECSGHQEEM GSALLESSVK GLDSRKRRRY GQDTELDRMK  300
GAQQLPAEPE REQTKTQKGD GRLNSPSSKH GRKNSKQRSQ SSDPTKEEYI HVRARRGQAT  360
NSHSLAERVR REKISERMKF LQDLVPGCDK VTGKAVMLDE IINYVQSLQR QVEFLTMKLS  420
TVNPWLDFNL GLLAKDSQAG PSSSLAFPSD NTAITYTSLH GWQSGLLQSG FPGDGNCIDV  480
FRRSINSQFA SMSDGYSDPS SQVPNVWDNQ LHNVVKMGFN SSMPLDCQDL SSLPPDQMKA  540
ER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	289	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-89	bHLH family protein