PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU30026.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 280aa    MW: 31947.1 Da    PI: 8.2229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU30026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++ Ed +l+d++ ++G g+W++++   g+ Rt+k+c++rw +yl
       PHU30026.1 15 RGLWSPYEDHKLKDYILKHGHGCWASVPINSGLQRTGKSCRLRWINYL 62
                     788*******************************************97 PP
2Myb_DNA-binding56.37.2e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++teE+e ++ ++ +lG++ W+ Ia++++ gRt++++k++w++yl
       PHU30026.1  68 RGTFSTEEEETILTLHGMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGCKQMDKPK QKHKRGLWSP YEDHKLKDYI LKHGHGCWAS VPINSGLQRT GKSCRLRWIN  60
YLRPGLKRGT FSTEEEETIL TLHGMLGNKW SQIAQHLPGR TDNEIKNHWH SYLKKSVSKM  120
AKTYSENAEA SSSSMKLVSK KSSNLGSFEL VEGALLADID QSTLHVQLPQ ENRECNLPKV  180
LFSEWFSLDQ FNVQDFKNTI KQHHSKNNYG CNDSVFQLDA FAQYGPLLAM NEAITYGNDI  240
NGGFNNMFQP PLKFDDQIFV NGFEEFISGE FNVNGGVMYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-57MYB family protein