PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU30061.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 257aa    MW: 29883.3 Da    PI: 6.0561
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU30061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.34.7e-19858151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ie+ ++rqvtfskRr  ++KKA+E+ + Cd++v+ + fs++g+l  +ss
  PHU30061.1  8 KKIEEITKRQVTFSKRRSNLMKKAKEIDICCDVDVLFVAFSPSGRLSKFSS 58
                689*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGRKIEMKKI EEITKRQVTF SKRRSNLMKK AKEIDICCDV DVLFVAFSPS GRLSKFSSKK  60
SIEDTLQRYI NLPVERRFRN YKPGAEQESS LHQLCWCESN LKLSLEKVMA RKMKLETQEK  120
MDLQFAAQQT APQQFDNWVN PYRPILSPIS TMGIQLNNAS QLGLEYAHSN WNINLNHNNN  180
NNNTIQHNDH NITTIVQNDE RAPNESNNTM EANTKQTSEY FVESANDNDA WEWDNDFLNE  240
AFSGEEFRNM DSSSNDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-20MIKC_MADS family protein