PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30284.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 189aa MW: 21765 Da PI: 9.6284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.9e-06	29	48	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ PHU30284.1 29 FSCHLCYKTFNRYNNLQMHM 48 89*****************9 PP
2	zf-C2H2	16.8	2e-05	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ PHU30284.1 113 FMCRKCGKPFAVKGDWRTHEKNC 135 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MSNNTTSSLI KGQYWIPTPS QILIGPTQFS CHLCYKTFNR YNNLQMHMWG HGSQYRKGPE 60 SLRGTQPSAM LRLPCYCCAH GCKHNIDHPR ARPLKDFRTL QTHYKRKHGA KPFMCRKCGK 120 PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHIKSF GRGHGAVGVP NLEELEEDST 180 SEIEQDLIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein