PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30407.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 1007aa MW: 111476 Da PI: 5.9399

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.3e-41	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ PHU30407.1 150 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 227 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1007 aa Download sequence
MEASVGERFY HMGGPDLRGL GKRSLEWDLT DWKWDGDLFI ATPLHQNAPN YQSRQFFPVE 60 TGNLASSNSS SSCSEEVNHG MEQQRRELEK RRRVIVVEED DSGPLSLKLG GQGEPAAASA 120 DAGGRDLGGN WDGAAGKRTK LVAPAGSRAV CQVDDCGTDL SKAKDYHRRH KVCEMHSKAS 180 RALVGNVMQR FCQQCSRFHA LQEFDEGKRS CRRRLAGHNK RRRKTQSESV ANNNSVNEGQ 240 ASGYSLMSLL KILSNMHSNG TNPTEDQNLL SHLLRSLASQ GTTNGDKSLS GLLQESSNLL 300 NNRSILRNPE VASLISNGSQ APPRAKEHQF TNSATEMPQK RLDVHDVRLE DARTASSQSP 360 GILFPIQSNS QAYTPGREST TGRSKLMDFD LNDAYVDSDD CGEDLVRSPV PECPSWLQQD 420 SHQSSPPQTS GNSDSASAQS PSSSSGDNQN RTDRIVFKLF GKDPSDFPFV VRAQILDWLS 480 HSPTEIESYI RPGCIVLTIY LRLPESAWEE LSYNLSSSLS RLLDVPGGDS FWTRGWIYIR 540 VQNQIAFVCD GQVLLDMSLP YVSNDDSTLL SVRPIAVPVS GRVQFLVKGY NLTKPSTRLL 600 CALDGSYLVP EANNEVEEHG DVVGKDDKIQ SLNFTYSVSA VAGRGFIEVE DHGVNNSFFP 660 FIIAEEDVCS EIRMLESDLE LSSSDYVNGQ TSNMEARNQA MDFIHELGWL LHRNNLKARL 720 DHFGPNAVLY PLKRFKWLVD FSVDHDWCAV VKKLLNILLD GTVGAGDNSF LKFALSELGL 780 LHRAVRRNSR PLVELLLTYT PESVADELCS EYQSLVGIGG EFLFRPDCVG PAGLTPLHVA 840 ACIDGYEDVL DALTDDPGKV AIEAWKNTRD GAGFTPEDYA RLRGHYSYIH LVQRKISKKA 900 TSGHIVVDIP SVPAVVESNN QKDEVYTTTS LEITMTERTP IARPCGLCDR KLAYGSRGRS 960 LLYRPAMFSM VAMAAVCVCV ALLFRGSPEV LYIFRPFRWE MVDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 1007 aa Download sequence

MEASVGERFY HMGGPDLRGL GKRSLEWDLT DWKWDGDLFI ATPLHQNAPN YQSRQFFPVE  60
TGNLASSNSS SSCSEEVNHG MEQQRRELEK RRRVIVVEED DSGPLSLKLG GQGEPAAASA  120
DAGGRDLGGN WDGAAGKRTK LVAPAGSRAV CQVDDCGTDL SKAKDYHRRH KVCEMHSKAS  180
RALVGNVMQR FCQQCSRFHA LQEFDEGKRS CRRRLAGHNK RRRKTQSESV ANNNSVNEGQ  240
ASGYSLMSLL KILSNMHSNG TNPTEDQNLL SHLLRSLASQ GTTNGDKSLS GLLQESSNLL  300
NNRSILRNPE VASLISNGSQ APPRAKEHQF TNSATEMPQK RLDVHDVRLE DARTASSQSP  360
GILFPIQSNS QAYTPGREST TGRSKLMDFD LNDAYVDSDD CGEDLVRSPV PECPSWLQQD  420
SHQSSPPQTS GNSDSASAQS PSSSSGDNQN RTDRIVFKLF GKDPSDFPFV VRAQILDWLS  480
HSPTEIESYI RPGCIVLTIY LRLPESAWEE LSYNLSSSLS RLLDVPGGDS FWTRGWIYIR  540
VQNQIAFVCD GQVLLDMSLP YVSNDDSTLL SVRPIAVPVS GRVQFLVKGY NLTKPSTRLL  600
CALDGSYLVP EANNEVEEHG DVVGKDDKIQ SLNFTYSVSA VAGRGFIEVE DHGVNNSFFP  660
FIIAEEDVCS EIRMLESDLE LSSSDYVNGQ TSNMEARNQA MDFIHELGWL LHRNNLKARL  720
DHFGPNAVLY PLKRFKWLVD FSVDHDWCAV VKKLLNILLD GTVGAGDNSF LKFALSELGL  780
LHRAVRRNSR PLVELLLTYT PESVADELCS EYQSLVGIGG EFLFRPDCVG PAGLTPLHVA  840
ACIDGYEDVL DALTDDPGKV AIEAWKNTRD GAGFTPEDYA RLRGHYSYIH LVQRKISKKA  900
TSGHIVVDIP SVPAVVESNN QKDEVYTTTS LEITMTERTP IARPCGLCDR KLAYGSRGRS  960
LLYRPAMFSM VAMAAVCVCV ALLFRGSPEV LYIFRPFRWE MVDFGTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein