PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30451.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 245aa MW: 26896.7 Da PI: 8.7319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	157	178	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f C++Gd+C+FaH++ PHU30451.1 157 CSRFNTAEGCRFGDKCHFAHSE 178 99999999************95 PP
2	zf-CCCH	30.9	4.7e-10	212	236	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +f++ G C +G++C+FaHg PHU30451.1 212 FKTKMCANFSK-GLCTFGEKCHFAHG 236 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MSLFYSKDCS PDLIGHADVG YLSDPHKARS QIGYVFICGS TVISWRYTKQ SIVATSSNHA 60 EIIAIHERKN EPGNFIYLVQ IKFLVYFLFL ISRNQKAVDL CTSGCSYGEG CHFLHYVPGY 120 TAMSQLSNMG SNPAPPFGRN GASFSDGPAP TVKSKFCSRF NTAEGCRFGD KCHFAHSEME 180 VGKQVRPGYN DFQAKGPLSG FSPMVRGPGG PFKTKMCANF SKGLCTFGEK CHFAHGLNEL 240 QKPLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-14	C3H family protein