PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU30860.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 122aa    MW: 13491.5 Da    PI: 9.8245
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU30860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.1e-081222142
                HHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                +KKA+EL  LC++e+a +i+s+
  PHU30860.1  1 MKKAHELNALCGVEIAAVIYSP 22
                8*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MKKAHELNAL CGVEIAAVIY SPYSNGPVVF PHYEDTLNTF RKFKSLPTLV QSKSVVTREE  60
FTKVKEITNT NTKHEVLKEK VLPIDREGST SNASQAVVGP VVPGWTRSEG PTLRWKGILV  120
GP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.28e-13M-type_MADS family protein