PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU30896.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 214aa    MW: 25156.8 Da    PI: 6.6775
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU30896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1893.1e-5821194190364
        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 + e+L+v+p E laVn++l lh+++des+ ++++rd++L++vkslsPk+v++veqe+++n+ +F+ +fle+l+yy ++f+s+++ lpr+++eri+vE++
  PHU30896.1  21 DKEDLNVRPAEPLAVNFALVLHHMHDESAGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPHFLETLNYYLYVFESIHVALPRDHKERINVEQH 119
                 5689*********************************************************************************************** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                 +l+rei+n++  e+a+r+erhe le+Wr+r+++a Fkp+pls+++++++k+ll++++ + y+++ ++g l++gW++
  PHU30896.1 120 CLAREIMNILKYEEAKRVERHELLERWRSRFSMANFKPYPLSSSINATIKTLLENYY-RSYTLDMRNGVLYFGWMN 194
                 *********************************************************.66**************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MENGKASHLP QAADNVDRMR DKEDLNVRPA EPLAVNFALV LHHMHDESAG TQNHRDRLLR  60
MVKSLSPKIV TLVEQESNTN TVQFFPHFLE TLNYYLYVFE SIHVALPRDH KERINVEQHC  120
LAREIMNILK YEEAKRVERH ELLERWRSRF SMANFKPYPL SSSINATIKT LLENYYRSYT  180
LDMRNGVLYF GWMNGDESQF GCFLCLEIVI LPEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-87GRAS family protein