PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU31040.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 260aa    MW: 29347.1 Da    PI: 7.1408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU31040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18169203135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  PHU31040.1 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203
                 *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MDVYGVSAPD LFRIDDLLDF SNDQIFSTNN TNPDSSSHQY HHQPHSHNSS SAATATYYDN  60
LLPNSSDDFT DNLYVPSDDV AELEWLSNFV EDSFSNFSAN SITGTMNLSS NTTSFHGRSR  120
SKRSRSTSSW TTSLQNPNTT TTTKNKESSS VHTRERSFSP MDEDAPRRCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKEMLHQP  240
QQLPPPTTEE GMYGRHFRVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RSRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-63GATA family protein