PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM97343.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22517.4 Da    PI: 8.9773
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM97343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.9e-25956148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye
  PIM97343.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYE 56
                79*********************************************9 PP
2K-box47.76.9e-177315914100
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +e  ++e++ Lk eie L + +R +   + + ++l eL+ +e++Le  + ++Rs K+++++++i+ l++ke  lq +nk L++k++e
  PIM97343.1  73 TEDPKEEISMLKHEIEILHKGLRFISRGGAGAMTLDELNVIEKRLEIWIDHVRSAKMDIMVQEIQLLKNKEGILQAANKHLQQKVDE 159
                 677799******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYEQATK  60
GKICEKSCRQ VITEDPKEEI SMLKHEIEIL HKGLRFISRG GAGAMTLDEL NVIEKRLEIW  120
IDHVRSAKMD IMVQEIQLLK NKEGILQAAN KHLQQKVDEQ YGMGELAPML TNNIQYPLTT  180
NIQTQCPLTI PSETYLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-64MIKC_MADS family protein