PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM97397.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 227aa MW: 26541 Da PI: 7.4942

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM97397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.5e-20	69	122	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k PIM97397.1 69 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 122 56679************************************************9 PP
2	HD-ZIP_I/II	120.7	7.8e-39	69	159	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk++yd +++e+++L++ev +Lr+ lk PIM97397.1 69 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDVVSREKHKLQQEVLALRTILK 159 9*************************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MDWNGNFRVP FVSRPEINSF SFLYSYNNYD HQLTGLEMKQ PSMQASAMVP TLMDHKNNNN 60 MNIYGPDTKK KRLSTEQLES LENSFQEEIK LDPDRKMKLA KELGLQPRQI AVWFQNRRAR 120 WKGKQLERLY DALKQEYDVV SREKHKLQQE VLALRTILKD QMTKKQVSNG YTEVSGEETV 180 ESTSIPSSDK PNNINNQIAE CNYVLNMDDY NQVMMTPYNW ATLPSCP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	98	KKKRLSTEQLESLENSFQEEIKLDPDRKMK
2	117	125	RRARWKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-50	HD-ZIP family protein