PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM97880.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 285aa MW: 32468.2 Da PI: 4.6546

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM97880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.2	4.1e-36	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C lap fpa++p++f+ vhklFG++n+++llk+l+++++ +a++s+ y+A++r + PvyG++ i++l+ q++ +++el+++ + PIM97880.1 10 ACAACKYQRRRCTPECLLAPFFPADDPRTFRSVHKLFGVKNIQNLLKDLDPTRKAIAVKSIKYHADMRDKYPVYGCLVDIQHLNYQIQMAEEELQAVLQ 108 7*********************************************************************************************99877 PP DUF260 100 e 100 + PIM97880.1 109 Q 109 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MTLKNGTGQA CAACKYQRRR CTPECLLAPF FPADDPRTFR SVHKLFGVKN IQNLLKDLDP 60 TRKAIAVKSI KYHADMRDKY PVYGCLVDIQ HLNYQIQMAE EELQAVLQQL VYYQQQYQRE 120 VSPTDDYVSQ LQLGMAPPGN TSMQVVPQDN PTQYNAMTAV PFSNNSNVDY NTNMDDKEKN 180 NVDSMWIQQI QQTYSSNNND SNSIIIQPPV STSQPLPMPQ ETTQDYNEMH PFFDNVDDRQ 240 SYVASKEAFE SSFDSSIKDS RQPLEQIAEN ELKNAAACFS LTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-34	LBD family protein