PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM97960.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 340aa MW: 37160.4 Da PI: 5.4591

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM97960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	2e-08	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++ fC+ ++ ++C C ++H PIM97960.1 11 KLCDSCKSASATVFCRADSAFICVACDAKIHAA 43 68*****************************54 PP
2	zf-B_box	27.6	6e-09	53	98	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC++C +H+ H++vp+ PIM97960.1 53 VWVCEVCEQAPAAVTCKADAAALCATCDRDIHSAnplarrHDRVPV 98 689*****************************66899999999986 PP
3	CCT	70.1	5.7e-24	277	321	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e PIM97960.1 277 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 321 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGGETWSLTA KLCDSCKSAS ATVFCRADSA FICVACDAKI HAANKLASRH ARVWVCEVCE 60 QAPAAVTCKA DAAALCATCD RDIHSANPLA RRHDRVPVVP FYDAASATKS SPSAGEEYSE 120 EEAEAASWLL PDPNNKSDGE SESPEYKSAE YLFTDMDPYL DLDLISGEQK PHHVVANNEQ 180 KHYSSDGVVP VQNKNEFGSG QYSGPVVDGF PTYEVDYLGS KPFMYNFTSQ SISQSQVSSS 240 SMEVGVVPDH SAAMADVSDS TFCKNEAIPV PVSGIDREAR VLRYREKRKN RKFEKTIRYA 300 SRKAYAETRP RIKGRFAKRS ELEADSLIAA DASYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	6e-95	CO-like family protein