PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98144.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 134aa    MW: 14644.1 Da    PI: 8.9176
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.5e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p + r+++++s +yeA+ r+ +P+yG+vg+++++++ql+q ++e+
  PIM98144.1   4 SCNGCRVLRKGCSDNCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPAHLRPAIFKSFLYEACGRIVNPIYGSVGLMWSGSWQLCQNAVEA 102
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  PIM98144.1 103 VLKGT 107
                 88765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MRMSCNGCRV LRKGCSDNCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPAH  60
LRPAIFKSFL YEACGRIVNP IYGSVGLMWS GSWQLCQNAV EAVLKGTSIT QMASDVAEAK  120
NGPLPRFVQE SILQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-75LBD family protein