PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM98273.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 195aa MW: 21381.8 Da PI: 9.4115

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM98273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.9	4.1e-09	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG+Ck+G++Ck++H++ PIM98273.1 1 MRTGICKFGASCKYHHPK 18 8***************96 PP
2	zf-CCCH	31.1	4e-10	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f tG+Ck+G CkF+H++ PIM98273.1 62 GEKECSYFIMTGQCKFGVMCKFHHPQ 87 6789********************97 PP
3	zf-CCCH	31.2	3.8e-10	156	182	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rt Ck+G+ Ck++H+p PIM98273.1 156 PGQPECQYYLRTWDCKFGAACKYHHPP 182 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MRTGICKFGA SCKYHHPKHG VGSSAPVTLN VCGYPLRLVR LFENLGSCSI FYSITYESLL 60 QGEKECSYFI MTGQCKFGVM CKFHHPQPAG LEVPAPTLAR GPGPLAAQPT VGAGPVYGIM 120 LLSPLATAYT GPYLSITSSA GLSSSSQKGR AFPERPGQPE CQYYLRTWDC KFGAACKYHH 180 PPELGFRRLR WRSRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.2	2e-32	C3H family protein