PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM98823.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SBP

Protein Properties

Length: 431aa MW: 48298.3 Da PI: 8.8112

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM98823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.9e-42	146	221	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q PIM98823.1 146 CQVYGCKKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHILAEFDNGKRSCRKRLAGHNERRRKPQ 221 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MGSWCDFSGE KEYPCENLGL GSSKNSGLMG WVMNPSISRE NSVDCSTQKS IENQEFAELG 60 STQMMMKFFP KGSEKILHPF TVHPNVNSGP KEEPSGLVFE SNKRDSSMID LKLGRTSDQK 120 EIISVNHNLS CKRARPGSWN SQKPLCQVYG CKKDLSSSKD YHKRHKVCEV HSKTAKVIVN 180 GIEQRFCQQC SRFHILAEFD NGKRSCRKRL AGHNERRRKP QVMSSSRVGR FQDYIGSRFQ 240 GTTSTSSINR LTTVLHQQKY KVDDWIKPVK VEHEADWNSP KSLLRPQTSA NQNFPFLVGE 300 NSVQTTSKIN EFAMQNNIMC SDISSPSFFH NSSVTQEPNS IRALSLLSTL PQDSTNPSPL 360 VRTDGDSCYD SMTGLAKFSH SSWINLDKIS LRPLSVLDNS IGSVHYGDSP IIQGTDCSYQ 420 VSEGQPTIKF A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MGSWCDFSGE KEYPCENLGL GSSKNSGLMG WVMNPSISRE NSVDCSTQKS IENQEFAELG  60
STQMMMKFFP KGSEKILHPF TVHPNVNSGP KEEPSGLVFE SNKRDSSMID LKLGRTSDQK  120
EIISVNHNLS CKRARPGSWN SQKPLCQVYG CKKDLSSSKD YHKRHKVCEV HSKTAKVIVN  180
GIEQRFCQQC SRFHILAEFD NGKRSCRKRL AGHNERRRKP QVMSSSRVGR FQDYIGSRFQ  240
GTTSTSSINR LTTVLHQQKY KVDDWIKPVK VEHEADWNSP KSLLRPQTSA NQNFPFLVGE  300
NSVQTTSKIN EFAMQNNIMC SDISSPSFFH NSSVTQEPNS IRALSLLSTL PQDSTNPSPL  360
VRTDGDSCYD SMTGLAKFSH SSWINLDKIS LRPLSVLDNS IGSVHYGDSP IIQGTDCSYQ  420
VSEGQPTIKF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-47	SBP family protein